A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma.

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

Automatic descriptor selection and volcano curve generation

A shiny app for custom analyzes of preprocessed omics data

This project visualizes Treatment-Emergent Adverse Events(TEAE) in a single graph.

Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee

a polar representation of multiple volcano plots

Transparent statistical pipeline for identifying biomarkers associated with neurological disease progression. Spearman correlations, Mann-Whitney group comparisons, volcano plots, and FDR correction.

Analyse d'expression différentielle de gènes avec le logiciel R

Useful R functions for Multi-omics analyses

Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)

Data for volcano3D package

Course Work for Practical Bioinformatics Course BIO231, Assignments of BLAST,GenBANK search, NCBI ENTREZ API. Microarray Analysis

An npm package containing rna-seq plots

A multi-omics analysis framework for cancer survival prediction (KIRC/LUSC). Utilizes LASSO feature selection, Cox Regression, and Volcano plots to identify genomic biomarkers and predict patient outcomes from TCGA data.

Tuxedo-procedure-for-RNA-SEQ-analysis

A Shiny interface to analyse Olink data

R package that visualizes MaxQuant output of activity-based protein profiling experiments.

An R/Bioconductor pipeline for bulk RNA-seq differential expression analysis with downstream QC and visualization (e.g., PCA, heatmaps, volcano plots) using packages like DESeq2/edgeR.